Protein Information

Protein ZmOrphan46
ZmOrphan46 is a protein in the Orphans family.
Information
Orphans Name:	ZmOrphan46
Species:	Maize
Orphans Family:	Orphans
Gene Name(Synonym):
Uniprot ID:	A0A1D6PDQ1

Overview of domains present in v5 transcripts
	G2-like	PF00072
Zm00001eb086410_T001

Gene ID	Type	Sequence	FIMO	Position
Zm00001d004102	DAPseq	sequence	fimo	position
Zm00001d004102	DAPseq	sequence	fimo	position
Zm00001d004102	ChIPseq	sequence	fimo	position
Zm00001d004102	PChIPseq	sequence	fimo	position

Zm00001eb086410_T001 from maize genome v5

Amino Acid Sequence
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Color Coding: None Secondary Structure Domain

MGTQIVREQTSGSLTAIVVDENLCHARAASCMLANLQCKVIVYASPVDALKFLKDHQRDTDFALVEVNMKEMHGFQFLDM
SRKLHKSLQVIMMSADTTWPTMKRSVELGARFLIKKPLDANTMNNLWQHLDLKFQRTDKIKALFPGIEGKTGNAFEEGTN
KQKGTHLMWTPFLQRKFLQAVELLGEDASPKKIQLLMNVNSVSRKQISAHLQKHRKKVEKELRNSNANNSSHGIGGASNS
RPSRIFEISHGRFQYNRPDVQPEHRSDESVSVEQTETIEETQSNRLYEAMRRALQLGSVFEEPQLPNDPPAGKDAREVEE
VEMTMRDGNYRDAGTDAFGDKNEASGTHSSDGNNAKVKSKDDSADKLVSCHDELRPVVTLVTYSDSEDGETL

Secondary Structure Color Code
BEND	region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P	left-handed polyproline helix
HELX_RH_3T_P	right-handed 3-10 helix
HELX_RH_AL_P	right-handed alpha helix
HELX_RH_PI_P	right-handed pi helix
STRN	beta strand
TURN_TY1_P	type I turn
UNDETERMINED	no data available

Domains Present
PF00072
G2-like
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Nucleotide Sequence
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CAAACACCAGCCTACCCTGTAGAAA...

GRMZM2G013612_T01 from maize genome v3

Related TFome: pUT6239

Amino Acid Sequence
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MGTQIVREQTSGSLTAIVVDENLCHARAASCMLANLQCKVIVYASPVDALKFLKDHQRDTDFALVEVNMKEMHGFQFLDM
SRKLHKSLQVIMMSADTTWPTMKRSVELGARFLIKKPLDANTMNNLWQHLDLKFQRTDKIKALFPGIEGKTGNAFEEGTN
KQKGTHLMWTPFLQRKFLQAVELLGEDASPKKIQLLMNVNSVSRKQISAHLQKHRKKVEKELRNSNANNSSHGIGGASNS
RPSRIFEISHGRFQYNRPDVQPEHRSDESVSVEQTETIEETQSNRLYEAMRRALQLGSVFEEPQLPNDPPAGKDAREVEE
VEMTMRDGNYRDAGTDAFGDKNEASGTHSSDGNNAKVKSKDDSADKLVSCHDELRPVVTLVTYSDSEDGETL

Nucleotide Sequence
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ATGGGCACTCAAATAGTAAGGGAAC...

Zm00001d004102_T001 from maize genome v4

Amino Acid Sequence
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MGTQIVREQTSGSLTAIVVDENLCHARAASCMLANLQCKVIVYASPVDALKFLKDHQRDTDFALVEVNMKEMHGFQFLDM
SRKLHKSLQVIMMSADTTWPTMKRSVELGARFLIKKPLDANTMNNLWQHLDLKFQRTDKIKALFPGIEGKTGNAFEEGTN
KQKGTHLMWTPFLQRKFLQAVELLGEDASPKKIQLLMNVNSVSRKQISAHLQKHRKKVEKELRNSNANNSSHGIGGASNS
RPSRIFEISHGRFQYNRPDVQPEHRSDESVSVEQTETIEETQSNRLYEAMRRALQLGSVFEEPQLPNDPPAGKDAREVEE
VEMTMRDGNYRDAGTDAFGDKNEASGTHSSDGNNAKVKSKDDSADKLVSCHDELRPVVTLVTYSDSEDGETL

Nucleotide Sequence
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TTCCCACGAATTTGGACCACAAACA...

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Protein ZmOrphan46

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs

Interactions where ZmOrphan46 is the regulator

Interactions where ZmOrphan46 is the target
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Zm00001eb086410_T001 from maize genome v5

Amino Acid Sequence
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Color Coding: None Secondary Structure Domain

Nucleotide Sequence
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GRMZM2G013612_T01 from maize genome v3

Amino Acid Sequence
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Nucleotide Sequence
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Zm00001d004102_T001 from maize genome v4

Amino Acid Sequence
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Nucleotide Sequence
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